Its quite possible the carb is bad. Id for starters pull a plug and post a picture of it, I bet its black with soot. Its sounds like you running way to rich, and if so its washing down the cylinder walls of that new engine and doing it no favors. I cant say I'm familiar with the 89's specifically, but after 4 late CJ's I know the emissions and carbs are or can be pretty pissy to sort out. Is the return on the filter hooked up? is the line plugged? you running a FPR?