There is no one site to cover all the bases. Rockauto and any local parts store can get you a lot of good stuff as long as you stay within the decent brands.
for "mod" type parts, Quadratec is my favorite. Amazon has some stuff but don't get too much electrical or wear parts from there. there really is no great place to send you, you pretty much need to figure out what you want to do and then figure out where the best place is to buy each thing you want to get.